Publications
16 papers · 10 talks · 2 posters2024
Machine Learned Potential for High-Throughput Phonon Calculations of Metal-Organic Frameworks
AMOEBA Polarizable Molecular Dynamics Simulations of Guanine Quadruplexes: from the c-Kit Proto-oncogene to HIV-1
Advancing Force Fields Parameterization: A Directed Graph Attention Networks Approach
Incorporating Neural Networks into the AMOEBA Polarizable Force Field
High-resolution Molecular Dynamics Simulations of the Pyruvate Kinase Muscle Isoform 1 and 2 (PKM1/2)
2023
Scalable hybrid deep neural networks/polarizable potentials biomolecular simulations including long-range effects
Routine molecular dynamics simulations including nuclear quantum effects: from force fields to machine learning potentials
2022
Accurate Deep Learning-Aided Density-Free Strategy for Many-Body Dispersion-Corrected Density Functional Theory
An Efficient Gaussian-Accelerated Molecular Dynamics (GaMD) Multilevel Enhanced Sampling Strategy: Application to Polarizable Force Fields Simulations of Large Biological Systems
Computationally driven discovery of SARS-CoV-2 Mpro inhibitors: from design to experimental validation
How Robust Is the Reversible Steric Shielding Strategy for Photoswitchable Organocatalysts?
2021
High-resolution mining of the SARS-CoV-2 main protease conformational space: supercomputer-driven unsupervised adaptive sampling
Interfacial water many-body effects drive structural dynamics and allosteric interactions in SARS-CoV-2 main protease dimerization interface
Tinker-HP: Accelerating molecular dynamics simulations of large complex systems with advanced point dipole polarizable force fields using GPUs and multi-GPU systems
Talks
invited & conference BIDMaP seminar — University of California Berkeley, USA 2024
Tinker Developer Workshop — Washington University in St. Louis, USA 2023
Bakar Institute of Digital Materials for the Planet — UC Berkeley (zoom), USA 2023
MIT-IBM Watson AI Lab — MIT & IBM (zoom), Cambridge, USA 2023
G. T. Seaborg Institute for Transactinium Science — Los Alamos National Laboratory (zoom), USA 2023
Biomedical Engineering meeting — University of Texas at Austin, USA 2023
Tinker Developer Workshop — National Institutes of Health, Washington DC, USA 2022
Many-Body Interactions workshop — Telluride Science & Innovation Center, USA 2022
EMC2 meeting — Sorbonne University, Paris, France 2022
IBM Research Zurich — Zurich, Switzerland 2019
Posters
CECAM workshop: Chasing CVs using Machine Learning — INRIA, Paris, France 2022
Swiss Chemical Society Fall Meeting — ETH Zurich, Switzerland 2019